MCMC diagnostics - recruitment
Test v4.0 - Ingrowth model accounting for ingrowth and mortality of new individuals with plot random effect and basal area efffects on ingrowth rate m
Will Vieira
Last updated on 22 November, 2022
Rhat
Divergent transitions
Posterior distribution of parameters
Correlation between parameters
Plot random effect
Plot random effect in function of annual mean temperature and basal area
Changes in plot random effect from past models
Compare plot random effect with last model to check how variance is changing.
Data distribution
Predictions
Ingrowth in function of time
Basal area effect
Ingrowth in function of Basal area of adults
Cross-validation
Mean squared error (MSE)
Rsquared
The distribution of R squared values is calculated using the Gelman et al. 2018 definition.
We also calculated the \(R^2\) from the linear model using the 1:1 plot comparing observed values to the predicted values.
Leave-one-out cross-validation to compare models
# Sampling time
